PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA019218-PA
Common NameOsI_18540
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 110aa    MW: 11941.8 Da    PI: 10.549
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA019218-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH201.3e-064592855
                      HHHHHHHH...HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  8 rErrRRdr...iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                       ErrR++r   ++ ++e Lr+l+P     +++  s  e L +A +YI  Lq
  BGIOSGA019218-PA 45 KERRRMRRcveVRRKMEALRRLVPGG---GGGEDSGEELLFRAADYIARLQ 92
                      456665543349*************9...9*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.24E-939106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-644107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MVAHATINNG RCDAAPAAAA KSRPAVMPPP ASNHGAACKN SGSNKERRRM RRCVEVRRKM  60
EALRRLVPGG GGGEDSGEEL LFRAADYIAR LQVQVKVMQL MVDVLEQTKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637969.16e-76PREDICTED: transcription factor IBH1-like
TrEMBLA0A0P0WI617e-76A0A0P0WI61_ORYSJ; Os05g0157400 protein
TrEMBLA2Y0L77e-76A2Y0L7_ORYSI; Putative uncharacterized protein
TrEMBLA0A0E0PHT67e-76A0A0E0PHT6_ORYRU; Uncharacterized protein
STRINGBGIOSGA019218-PA2e-75(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91112126